Why does Clip keep giving Error 999999: Error executing Function Invalid Topology [Topoengine Error]?Why does Erase give ERROR 999999 (Error executing function Invalid Topology Negative point valence)?Why Intersect gives ERROR 999999: Error executing function Invalid Topology [Too many lineseg endpoints]?Why does ArcGIS Upgrade Geodatabase tool throw ERROR 999999: Error executing function?Error 000358 or Error 999999 invalid SQLERROR 999999: Error executing function - Failed to execute (CopyRaster)ExtractSubDataset in ArcPy loop giving ERROR 999999?Understanding ArcMap Union ERROR 999999?Executing CostDistance Function in ArcPy gives Error 999999?

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Why does Clip keep giving Error 999999: Error executing Function Invalid Topology [Topoengine Error]?


Why does Erase give ERROR 999999 (Error executing function Invalid Topology Negative point valence)?Why Intersect gives ERROR 999999: Error executing function Invalid Topology [Too many lineseg endpoints]?Why does ArcGIS Upgrade Geodatabase tool throw ERROR 999999: Error executing function?Error 000358 or Error 999999 invalid SQLERROR 999999: Error executing function - Failed to execute (CopyRaster)ExtractSubDataset in ArcPy loop giving ERROR 999999?Understanding ArcMap Union ERROR 999999?Executing CostDistance Function in ArcPy gives Error 999999?













0















The layer being used as the Clip Features has been used before and worked fine, so I assume the issue is the layer I am trying to Clip (Input Features) - I keep receiving the same error when running the Clip tool :




Error 999999: Error executing Function Invalid Topology [Topoengine
Error]




The Clip tool has worked fine prior to this. After reading online similar queries regarding this error, the solution in the majority of cases was to change the Input Features to a shapefile - I have done this but receive the same error.



What is my best workaround for this issue?










share|improve this question



















  • 1





    Very often these errors are a result of projection issues.

    – Aaron
    May 17 '13 at 16:36











  • Remember to add the extension of the file, for example, *.tif

    – Herman Booysen
    Sep 14 '17 at 8:43











  • I get this error all the time, and usually the aforementioned tricks have worked for me. But today, for some reason and none of those tricks worked. I was ready to pull my hair out, but then I tried doubling the tolerance and that worked.

    – Jim Titus
    2 days ago















0















The layer being used as the Clip Features has been used before and worked fine, so I assume the issue is the layer I am trying to Clip (Input Features) - I keep receiving the same error when running the Clip tool :




Error 999999: Error executing Function Invalid Topology [Topoengine
Error]




The Clip tool has worked fine prior to this. After reading online similar queries regarding this error, the solution in the majority of cases was to change the Input Features to a shapefile - I have done this but receive the same error.



What is my best workaround for this issue?










share|improve this question



















  • 1





    Very often these errors are a result of projection issues.

    – Aaron
    May 17 '13 at 16:36











  • Remember to add the extension of the file, for example, *.tif

    – Herman Booysen
    Sep 14 '17 at 8:43











  • I get this error all the time, and usually the aforementioned tricks have worked for me. But today, for some reason and none of those tricks worked. I was ready to pull my hair out, but then I tried doubling the tolerance and that worked.

    – Jim Titus
    2 days ago













0












0








0








The layer being used as the Clip Features has been used before and worked fine, so I assume the issue is the layer I am trying to Clip (Input Features) - I keep receiving the same error when running the Clip tool :




Error 999999: Error executing Function Invalid Topology [Topoengine
Error]




The Clip tool has worked fine prior to this. After reading online similar queries regarding this error, the solution in the majority of cases was to change the Input Features to a shapefile - I have done this but receive the same error.



What is my best workaround for this issue?










share|improve this question
















The layer being used as the Clip Features has been used before and worked fine, so I assume the issue is the layer I am trying to Clip (Input Features) - I keep receiving the same error when running the Clip tool :




Error 999999: Error executing Function Invalid Topology [Topoengine
Error]




The Clip tool has worked fine prior to this. After reading online similar queries regarding this error, the solution in the majority of cases was to change the Input Features to a shapefile - I have done this but receive the same error.



What is my best workaround for this issue?







arcgis-desktop shapefile clip topology error-999999






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Apr 18 '18 at 22:35









PolyGeo

53.8k1781244




53.8k1781244










asked May 17 '13 at 14:27









user14756user14756

16115




16115







  • 1





    Very often these errors are a result of projection issues.

    – Aaron
    May 17 '13 at 16:36











  • Remember to add the extension of the file, for example, *.tif

    – Herman Booysen
    Sep 14 '17 at 8:43











  • I get this error all the time, and usually the aforementioned tricks have worked for me. But today, for some reason and none of those tricks worked. I was ready to pull my hair out, but then I tried doubling the tolerance and that worked.

    – Jim Titus
    2 days ago












  • 1





    Very often these errors are a result of projection issues.

    – Aaron
    May 17 '13 at 16:36











  • Remember to add the extension of the file, for example, *.tif

    – Herman Booysen
    Sep 14 '17 at 8:43











  • I get this error all the time, and usually the aforementioned tricks have worked for me. But today, for some reason and none of those tricks worked. I was ready to pull my hair out, but then I tried doubling the tolerance and that worked.

    – Jim Titus
    2 days ago







1




1





Very often these errors are a result of projection issues.

– Aaron
May 17 '13 at 16:36





Very often these errors are a result of projection issues.

– Aaron
May 17 '13 at 16:36













Remember to add the extension of the file, for example, *.tif

– Herman Booysen
Sep 14 '17 at 8:43





Remember to add the extension of the file, for example, *.tif

– Herman Booysen
Sep 14 '17 at 8:43













I get this error all the time, and usually the aforementioned tricks have worked for me. But today, for some reason and none of those tricks worked. I was ready to pull my hair out, but then I tried doubling the tolerance and that worked.

– Jim Titus
2 days ago





I get this error all the time, and usually the aforementioned tricks have worked for me. But today, for some reason and none of those tricks worked. I was ready to pull my hair out, but then I tried doubling the tolerance and that worked.

– Jim Titus
2 days ago










6 Answers
6






active

oldest

votes


















9














Couple of suggestions:



  1. Run Check Geometry tool on your layer that you wish to clip, you could then follow that up with a Repair Geometry if it finds errors. You may wish to do that on a backed up copy.

  2. Check whether the coordinate systems are different. Perhaps you are trying to Clip a dataset in Decimal Degrees with a dataset that is in Meters or vice versa? If so, reproject the Decimal Degrees data into the coordinate system of the other.





share|improve this answer
































    3














    ArcGIS often throws a topoengine error when it runs out of memory while running in 32 bit mode and performing overlay operations. To get around that I either chop-up the job or use 64 bit geoprocessing with lots of RAM and Repair Geometry on all input features (create local copies first if you don't want to mess up your inputs with the repair).






    share|improve this answer






























      1














      I ran into the same problem. I tried to clip GeoTIFF raster and keep giving me the 99999 error. I tried several solutions, one of them was to reproject the raster, but didn't work. My output extension was C:Users*****DocumentsArcGISDefault.gdb****_Clip



      I changed it to be something like that D:.....wherever you want to save it



      I also disable background processing (Geoprocessing > Geoprocessing option > uncheck enable option)



      It works right way.






      share|improve this answer
































        0














        Same Problem, using ArcGIS Desktop 10.2.2. (In case clipping big and irregullar shape)



        Solution :



        1. Try to split into small part then clip it one by one, and yes it will take a lot of time and work, but it works.

        or



        1. Try to clip it using QGIS (I use QGIS Desktop 2.6), I use QGIS and no need to split it one by one. just select area to clip using definition querry and clip.

        I recommended try solution number 2.






        share|improve this answer


















        • 1





          If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

          – Fabien Ancelin
          Feb 15 '17 at 19:09












        • Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

          – Rikudo Pain
          Feb 16 '17 at 2:38


















        0














        You might need to try Repair Geometry before using Clip
        http://desktop.arcgis.com/en/arcmap/10.3/tools/data-management-toolbox/repair-geometry.htm






        share|improve this answer























        • This was already mentioned in the most upvoted answer.

          – PolyGeo
          Mar 12 at 10:10


















        -1














        Make sure the file name is not too long. Try to rename one of the files and run it stand alone to test results. If you need to rename them, you can use commands in the Powershell or other utilities to rename the files.






        share|improve this answer






















          Your Answer








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          6 Answers
          6






          active

          oldest

          votes








          6 Answers
          6






          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes









          9














          Couple of suggestions:



          1. Run Check Geometry tool on your layer that you wish to clip, you could then follow that up with a Repair Geometry if it finds errors. You may wish to do that on a backed up copy.

          2. Check whether the coordinate systems are different. Perhaps you are trying to Clip a dataset in Decimal Degrees with a dataset that is in Meters or vice versa? If so, reproject the Decimal Degrees data into the coordinate system of the other.





          share|improve this answer





























            9














            Couple of suggestions:



            1. Run Check Geometry tool on your layer that you wish to clip, you could then follow that up with a Repair Geometry if it finds errors. You may wish to do that on a backed up copy.

            2. Check whether the coordinate systems are different. Perhaps you are trying to Clip a dataset in Decimal Degrees with a dataset that is in Meters or vice versa? If so, reproject the Decimal Degrees data into the coordinate system of the other.





            share|improve this answer



























              9












              9








              9







              Couple of suggestions:



              1. Run Check Geometry tool on your layer that you wish to clip, you could then follow that up with a Repair Geometry if it finds errors. You may wish to do that on a backed up copy.

              2. Check whether the coordinate systems are different. Perhaps you are trying to Clip a dataset in Decimal Degrees with a dataset that is in Meters or vice versa? If so, reproject the Decimal Degrees data into the coordinate system of the other.





              share|improve this answer















              Couple of suggestions:



              1. Run Check Geometry tool on your layer that you wish to clip, you could then follow that up with a Repair Geometry if it finds errors. You may wish to do that on a backed up copy.

              2. Check whether the coordinate systems are different. Perhaps you are trying to Clip a dataset in Decimal Degrees with a dataset that is in Meters or vice versa? If so, reproject the Decimal Degrees data into the coordinate system of the other.






              share|improve this answer














              share|improve this answer



              share|improve this answer








              edited Nov 21 '13 at 9:15









              PolyGeo

              53.8k1781244




              53.8k1781244










              answered May 17 '13 at 15:39









              HornbyddHornbydd

              26.9k32957




              26.9k32957























                  3














                  ArcGIS often throws a topoengine error when it runs out of memory while running in 32 bit mode and performing overlay operations. To get around that I either chop-up the job or use 64 bit geoprocessing with lots of RAM and Repair Geometry on all input features (create local copies first if you don't want to mess up your inputs with the repair).






                  share|improve this answer



























                    3














                    ArcGIS often throws a topoengine error when it runs out of memory while running in 32 bit mode and performing overlay operations. To get around that I either chop-up the job or use 64 bit geoprocessing with lots of RAM and Repair Geometry on all input features (create local copies first if you don't want to mess up your inputs with the repair).






                    share|improve this answer

























                      3












                      3








                      3







                      ArcGIS often throws a topoengine error when it runs out of memory while running in 32 bit mode and performing overlay operations. To get around that I either chop-up the job or use 64 bit geoprocessing with lots of RAM and Repair Geometry on all input features (create local copies first if you don't want to mess up your inputs with the repair).






                      share|improve this answer













                      ArcGIS often throws a topoengine error when it runs out of memory while running in 32 bit mode and performing overlay operations. To get around that I either chop-up the job or use 64 bit geoprocessing with lots of RAM and Repair Geometry on all input features (create local copies first if you don't want to mess up your inputs with the repair).







                      share|improve this answer












                      share|improve this answer



                      share|improve this answer










                      answered Jul 27 '15 at 11:49









                      Daniel MayerDaniel Mayer

                      562




                      562





















                          1














                          I ran into the same problem. I tried to clip GeoTIFF raster and keep giving me the 99999 error. I tried several solutions, one of them was to reproject the raster, but didn't work. My output extension was C:Users*****DocumentsArcGISDefault.gdb****_Clip



                          I changed it to be something like that D:.....wherever you want to save it



                          I also disable background processing (Geoprocessing > Geoprocessing option > uncheck enable option)



                          It works right way.






                          share|improve this answer





























                            1














                            I ran into the same problem. I tried to clip GeoTIFF raster and keep giving me the 99999 error. I tried several solutions, one of them was to reproject the raster, but didn't work. My output extension was C:Users*****DocumentsArcGISDefault.gdb****_Clip



                            I changed it to be something like that D:.....wherever you want to save it



                            I also disable background processing (Geoprocessing > Geoprocessing option > uncheck enable option)



                            It works right way.






                            share|improve this answer



























                              1












                              1








                              1







                              I ran into the same problem. I tried to clip GeoTIFF raster and keep giving me the 99999 error. I tried several solutions, one of them was to reproject the raster, but didn't work. My output extension was C:Users*****DocumentsArcGISDefault.gdb****_Clip



                              I changed it to be something like that D:.....wherever you want to save it



                              I also disable background processing (Geoprocessing > Geoprocessing option > uncheck enable option)



                              It works right way.






                              share|improve this answer















                              I ran into the same problem. I tried to clip GeoTIFF raster and keep giving me the 99999 error. I tried several solutions, one of them was to reproject the raster, but didn't work. My output extension was C:Users*****DocumentsArcGISDefault.gdb****_Clip



                              I changed it to be something like that D:.....wherever you want to save it



                              I also disable background processing (Geoprocessing > Geoprocessing option > uncheck enable option)



                              It works right way.







                              share|improve this answer














                              share|improve this answer



                              share|improve this answer








                              edited Apr 19 '18 at 1:59









                              Vince

                              14.8k32749




                              14.8k32749










                              answered Apr 19 '18 at 1:00









                              majidmajid

                              111




                              111





















                                  0














                                  Same Problem, using ArcGIS Desktop 10.2.2. (In case clipping big and irregullar shape)



                                  Solution :



                                  1. Try to split into small part then clip it one by one, and yes it will take a lot of time and work, but it works.

                                  or



                                  1. Try to clip it using QGIS (I use QGIS Desktop 2.6), I use QGIS and no need to split it one by one. just select area to clip using definition querry and clip.

                                  I recommended try solution number 2.






                                  share|improve this answer


















                                  • 1





                                    If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

                                    – Fabien Ancelin
                                    Feb 15 '17 at 19:09












                                  • Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

                                    – Rikudo Pain
                                    Feb 16 '17 at 2:38















                                  0














                                  Same Problem, using ArcGIS Desktop 10.2.2. (In case clipping big and irregullar shape)



                                  Solution :



                                  1. Try to split into small part then clip it one by one, and yes it will take a lot of time and work, but it works.

                                  or



                                  1. Try to clip it using QGIS (I use QGIS Desktop 2.6), I use QGIS and no need to split it one by one. just select area to clip using definition querry and clip.

                                  I recommended try solution number 2.






                                  share|improve this answer


















                                  • 1





                                    If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

                                    – Fabien Ancelin
                                    Feb 15 '17 at 19:09












                                  • Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

                                    – Rikudo Pain
                                    Feb 16 '17 at 2:38













                                  0












                                  0








                                  0







                                  Same Problem, using ArcGIS Desktop 10.2.2. (In case clipping big and irregullar shape)



                                  Solution :



                                  1. Try to split into small part then clip it one by one, and yes it will take a lot of time and work, but it works.

                                  or



                                  1. Try to clip it using QGIS (I use QGIS Desktop 2.6), I use QGIS and no need to split it one by one. just select area to clip using definition querry and clip.

                                  I recommended try solution number 2.






                                  share|improve this answer













                                  Same Problem, using ArcGIS Desktop 10.2.2. (In case clipping big and irregullar shape)



                                  Solution :



                                  1. Try to split into small part then clip it one by one, and yes it will take a lot of time and work, but it works.

                                  or



                                  1. Try to clip it using QGIS (I use QGIS Desktop 2.6), I use QGIS and no need to split it one by one. just select area to clip using definition querry and clip.

                                  I recommended try solution number 2.







                                  share|improve this answer












                                  share|improve this answer



                                  share|improve this answer










                                  answered Jan 19 '15 at 5:38









                                  Rikudo PainRikudo Pain

                                  288313




                                  288313







                                  • 1





                                    If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

                                    – Fabien Ancelin
                                    Feb 15 '17 at 19:09












                                  • Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

                                    – Rikudo Pain
                                    Feb 16 '17 at 2:38












                                  • 1





                                    If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

                                    – Fabien Ancelin
                                    Feb 15 '17 at 19:09












                                  • Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

                                    – Rikudo Pain
                                    Feb 16 '17 at 2:38







                                  1




                                  1





                                  If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

                                  – Fabien Ancelin
                                  Feb 15 '17 at 19:09






                                  If memory is the issue, then install 64 bits GeoProcessing and try the clip with it. Having two pieces of software make it complicated further down the road if you have to automate your workflows. Here is the link to the documentation: desktop.arcgis.com/en/arcmap/10.3/analyze/executing-tools/…

                                  – Fabien Ancelin
                                  Feb 15 '17 at 19:09














                                  Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

                                  – Rikudo Pain
                                  Feb 16 '17 at 2:38





                                  Thanks for input. But at least its the fastest solution, because if I'm waiting 2017 for your answer then I already got fired. Thanks anyway for information.

                                  – Rikudo Pain
                                  Feb 16 '17 at 2:38











                                  0














                                  You might need to try Repair Geometry before using Clip
                                  http://desktop.arcgis.com/en/arcmap/10.3/tools/data-management-toolbox/repair-geometry.htm






                                  share|improve this answer























                                  • This was already mentioned in the most upvoted answer.

                                    – PolyGeo
                                    Mar 12 at 10:10















                                  0














                                  You might need to try Repair Geometry before using Clip
                                  http://desktop.arcgis.com/en/arcmap/10.3/tools/data-management-toolbox/repair-geometry.htm






                                  share|improve this answer























                                  • This was already mentioned in the most upvoted answer.

                                    – PolyGeo
                                    Mar 12 at 10:10













                                  0












                                  0








                                  0







                                  You might need to try Repair Geometry before using Clip
                                  http://desktop.arcgis.com/en/arcmap/10.3/tools/data-management-toolbox/repair-geometry.htm






                                  share|improve this answer













                                  You might need to try Repair Geometry before using Clip
                                  http://desktop.arcgis.com/en/arcmap/10.3/tools/data-management-toolbox/repair-geometry.htm







                                  share|improve this answer












                                  share|improve this answer



                                  share|improve this answer










                                  answered Jul 6 '18 at 20:12









                                  Yanning WeiYanning Wei

                                  92




                                  92












                                  • This was already mentioned in the most upvoted answer.

                                    – PolyGeo
                                    Mar 12 at 10:10

















                                  • This was already mentioned in the most upvoted answer.

                                    – PolyGeo
                                    Mar 12 at 10:10
















                                  This was already mentioned in the most upvoted answer.

                                  – PolyGeo
                                  Mar 12 at 10:10





                                  This was already mentioned in the most upvoted answer.

                                  – PolyGeo
                                  Mar 12 at 10:10











                                  -1














                                  Make sure the file name is not too long. Try to rename one of the files and run it stand alone to test results. If you need to rename them, you can use commands in the Powershell or other utilities to rename the files.






                                  share|improve this answer



























                                    -1














                                    Make sure the file name is not too long. Try to rename one of the files and run it stand alone to test results. If you need to rename them, you can use commands in the Powershell or other utilities to rename the files.






                                    share|improve this answer

























                                      -1












                                      -1








                                      -1







                                      Make sure the file name is not too long. Try to rename one of the files and run it stand alone to test results. If you need to rename them, you can use commands in the Powershell or other utilities to rename the files.






                                      share|improve this answer













                                      Make sure the file name is not too long. Try to rename one of the files and run it stand alone to test results. If you need to rename them, you can use commands in the Powershell or other utilities to rename the files.







                                      share|improve this answer












                                      share|improve this answer



                                      share|improve this answer










                                      answered Jul 6 '18 at 18:13









                                      Rachel RotzRachel Rotz

                                      398




                                      398



























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