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Count pixels per class instance of a raster classification



The Next CEO of Stack OverflowArcGIS raster data - Group statistics for classificationNormalizing landsat image pixels prior to classification?Unsupervised raster classification using GDALRemove cell boundaries of raster pixels converted to vector formatHow to get a total amount of cells per classification type in a raster in ArcGIS 10.1?Rule of thumb for selecting ROIs for supervised classificationMaximum likelihood classification- changing class colour with every layerDistinction between pixel-based and object based classification?How to count raster pixels inside a vector/polygon layer in QGIS?Using Maximum Likelihood Classification and raster border in ArcGIS Desktop?










0















I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:



Kmeans Classification



What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation



Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!



Here is the dataset which is plotted:
Dropbox Link to .npy file










share|improve this question
























  • 2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?

    – ChrisWills
    yesterday












  • [1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.

    – benschbob91
    21 hours ago











  • Does this help? stackoverflow.com/questions/39346545/…

    – ChrisWills
    8 hours ago















0















I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:



Kmeans Classification



What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation



Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!



Here is the dataset which is plotted:
Dropbox Link to .npy file










share|improve this question
























  • 2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?

    – ChrisWills
    yesterday












  • [1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.

    – benschbob91
    21 hours ago











  • Does this help? stackoverflow.com/questions/39346545/…

    – ChrisWills
    8 hours ago













0












0








0








I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:



Kmeans Classification



What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation



Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!



Here is the dataset which is plotted:
Dropbox Link to .npy file










share|improve this question
















I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:



Kmeans Classification



What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation



Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!



Here is the dataset which is plotted:
Dropbox Link to .npy file







classification






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited 21 hours ago







benschbob91

















asked yesterday









benschbob91benschbob91

164




164












  • 2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?

    – ChrisWills
    yesterday












  • [1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.

    – benschbob91
    21 hours ago











  • Does this help? stackoverflow.com/questions/39346545/…

    – ChrisWills
    8 hours ago

















  • 2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?

    – ChrisWills
    yesterday












  • [1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.

    – benschbob91
    21 hours ago











  • Does this help? stackoverflow.com/questions/39346545/…

    – ChrisWills
    8 hours ago
















2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?

– ChrisWills
yesterday






2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?

– ChrisWills
yesterday














[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.

– benschbob91
21 hours ago





[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.

– benschbob91
21 hours ago













Does this help? stackoverflow.com/questions/39346545/…

– ChrisWills
8 hours ago





Does this help? stackoverflow.com/questions/39346545/…

– ChrisWills
8 hours ago










1 Answer
1






active

oldest

votes


















0














This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):



import gdal
import numpy as np

file = 'path to input image'

# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)

# subset the array to only contain classification values equal to 1
class1 = data[data==1]

# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]

# print the length of class1 (the number of pixels
with a classification value of 1)

print(len(class1))
print(len(class2))
print(len(class3))


If you have a continuous dataset, you can count the number of pixels within a range instead using:



class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))





share|improve this answer

























  • This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

    – benschbob91
    21 hours ago











  • @benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

    – Nathan Thomas
    4 hours ago











  • Or try: stackoverflow.com/questions/49771746/…

    – Nathan Thomas
    4 hours ago











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1 Answer
1






active

oldest

votes








1 Answer
1






active

oldest

votes









active

oldest

votes






active

oldest

votes









0














This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):



import gdal
import numpy as np

file = 'path to input image'

# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)

# subset the array to only contain classification values equal to 1
class1 = data[data==1]

# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]

# print the length of class1 (the number of pixels
with a classification value of 1)

print(len(class1))
print(len(class2))
print(len(class3))


If you have a continuous dataset, you can count the number of pixels within a range instead using:



class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))





share|improve this answer

























  • This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

    – benschbob91
    21 hours ago











  • @benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

    – Nathan Thomas
    4 hours ago











  • Or try: stackoverflow.com/questions/49771746/…

    – Nathan Thomas
    4 hours ago















0














This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):



import gdal
import numpy as np

file = 'path to input image'

# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)

# subset the array to only contain classification values equal to 1
class1 = data[data==1]

# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]

# print the length of class1 (the number of pixels
with a classification value of 1)

print(len(class1))
print(len(class2))
print(len(class3))


If you have a continuous dataset, you can count the number of pixels within a range instead using:



class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))





share|improve this answer

























  • This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

    – benschbob91
    21 hours ago











  • @benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

    – Nathan Thomas
    4 hours ago











  • Or try: stackoverflow.com/questions/49771746/…

    – Nathan Thomas
    4 hours ago













0












0








0







This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):



import gdal
import numpy as np

file = 'path to input image'

# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)

# subset the array to only contain classification values equal to 1
class1 = data[data==1]

# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]

# print the length of class1 (the number of pixels
with a classification value of 1)

print(len(class1))
print(len(class2))
print(len(class3))


If you have a continuous dataset, you can count the number of pixels within a range instead using:



class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))





share|improve this answer















This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):



import gdal
import numpy as np

file = 'path to input image'

# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)

# subset the array to only contain classification values equal to 1
class1 = data[data==1]

# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]

# print the length of class1 (the number of pixels
with a classification value of 1)

print(len(class1))
print(len(class2))
print(len(class3))


If you have a continuous dataset, you can count the number of pixels within a range instead using:



class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))






share|improve this answer














share|improve this answer



share|improve this answer








edited yesterday

























answered yesterday









Nathan ThomasNathan Thomas

421212




421212












  • This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

    – benschbob91
    21 hours ago











  • @benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

    – Nathan Thomas
    4 hours ago











  • Or try: stackoverflow.com/questions/49771746/…

    – Nathan Thomas
    4 hours ago

















  • This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

    – benschbob91
    21 hours ago











  • @benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

    – Nathan Thomas
    4 hours ago











  • Or try: stackoverflow.com/questions/49771746/…

    – Nathan Thomas
    4 hours ago
















This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

– benschbob91
21 hours ago





This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".

– benschbob91
21 hours ago













@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

– Nathan Thomas
4 hours ago





@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)

– Nathan Thomas
4 hours ago













Or try: stackoverflow.com/questions/49771746/…

– Nathan Thomas
4 hours ago





Or try: stackoverflow.com/questions/49771746/…

– Nathan Thomas
4 hours ago

















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