Count pixels per class instance of a raster classification The Next CEO of Stack OverflowArcGIS raster data - Group statistics for classificationNormalizing landsat image pixels prior to classification?Unsupervised raster classification using GDALRemove cell boundaries of raster pixels converted to vector formatHow to get a total amount of cells per classification type in a raster in ArcGIS 10.1?Rule of thumb for selecting ROIs for supervised classificationMaximum likelihood classification- changing class colour with every layerDistinction between pixel-based and object based classification?How to count raster pixels inside a vector/polygon layer in QGIS?Using Maximum Likelihood Classification and raster border in ArcGIS Desktop?
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Count pixels per class instance of a raster classification
The Next CEO of Stack OverflowArcGIS raster data - Group statistics for classificationNormalizing landsat image pixels prior to classification?Unsupervised raster classification using GDALRemove cell boundaries of raster pixels converted to vector formatHow to get a total amount of cells per classification type in a raster in ArcGIS 10.1?Rule of thumb for selecting ROIs for supervised classificationMaximum likelihood classification- changing class colour with every layerDistinction between pixel-based and object based classification?How to count raster pixels inside a vector/polygon layer in QGIS?Using Maximum Likelihood Classification and raster border in ArcGIS Desktop?
I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:
What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation
Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!
Here is the dataset which is plotted:
Dropbox Link to .npy file
classification
add a comment |
I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:
What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation
Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!
Here is the dataset which is plotted:
Dropbox Link to .npy file
classification
2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?
– ChrisWills
yesterday
[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.
– benschbob91
21 hours ago
Does this help? stackoverflow.com/questions/39346545/…
– ChrisWills
8 hours ago
add a comment |
I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:
What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation
Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!
Here is the dataset which is plotted:
Dropbox Link to .npy file
classification
I have a fairly easy problem but I can not find any algorithm for it.
I have this kmeans classification of a windspeed pattern from a model output:
What I want now is to count the pixels in each patch of the classification. Basically meaning I want to count the coherent pixels of each instance. It would be furthermore awesome to have an algorithm to describe the shape of the instances.
What I have found so far is a CNN which does an instance segmentation.
OpenCV instance segmentation
Now I wonder if there is something out there which does the job easier than a NN.
Any algorithm/language is welcome!
Here is the dataset which is plotted:
Dropbox Link to .npy file
classification
classification
edited 21 hours ago
benschbob91
asked yesterday
benschbob91benschbob91
164
164
2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?
– ChrisWills
yesterday
[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.
– benschbob91
21 hours ago
Does this help? stackoverflow.com/questions/39346545/…
– ChrisWills
8 hours ago
add a comment |
2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?
– ChrisWills
yesterday
[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.
– benschbob91
21 hours ago
Does this help? stackoverflow.com/questions/39346545/…
– ChrisWills
8 hours ago
2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?
– ChrisWills
yesterday
2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?
– ChrisWills
yesterday
[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.
– benschbob91
21 hours ago
[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.
– benschbob91
21 hours ago
Does this help? stackoverflow.com/questions/39346545/…
– ChrisWills
8 hours ago
Does this help? stackoverflow.com/questions/39346545/…
– ChrisWills
8 hours ago
add a comment |
1 Answer
1
active
oldest
votes
This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):
import gdal
import numpy as np
file = 'path to input image'
# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)
# subset the array to only contain classification values equal to 1
class1 = data[data==1]
# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]
# print the length of class1 (the number of pixels
with a classification value of 1)
print(len(class1))
print(len(class2))
print(len(class3))
If you have a continuous dataset, you can count the number of pixels within a range instead using:
class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
add a comment |
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1 Answer
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active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):
import gdal
import numpy as np
file = 'path to input image'
# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)
# subset the array to only contain classification values equal to 1
class1 = data[data==1]
# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]
# print the length of class1 (the number of pixels
with a classification value of 1)
print(len(class1))
print(len(class2))
print(len(class3))
If you have a continuous dataset, you can count the number of pixels within a range instead using:
class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
add a comment |
This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):
import gdal
import numpy as np
file = 'path to input image'
# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)
# subset the array to only contain classification values equal to 1
class1 = data[data==1]
# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]
# print the length of class1 (the number of pixels
with a classification value of 1)
print(len(class1))
print(len(class2))
print(len(class3))
If you have a continuous dataset, you can count the number of pixels within a range instead using:
class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
add a comment |
This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):
import gdal
import numpy as np
file = 'path to input image'
# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)
# subset the array to only contain classification values equal to 1
class1 = data[data==1]
# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]
# print the length of class1 (the number of pixels
with a classification value of 1)
print(len(class1))
print(len(class2))
print(len(class3))
If you have a continuous dataset, you can count the number of pixels within a range instead using:
class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))
This solution, using a combination of gdal and python, will count the number of pixels per class (discrete dataset):
import gdal
import numpy as np
file = 'path to input image'
# Open the image and read in the values as an array
dataset = gdal.Open(file)
band = dataset.GetRasterBand(1)
Cols = dataset.RasterXSize
Rows = dataset.RasterYSize
data = band.ReadAsArray(0, 0, Cols, Rows).astype(np.float)
# subset the array to only contain classification values equal to 1
class1 = data[data==1]
# Repeat this for all classification values
class2 = data[data==2]
class3 = data[data==3]
# print the length of class1 (the number of pixels
with a classification value of 1)
print(len(class1))
print(len(class2))
print(len(class3))
If you have a continuous dataset, you can count the number of pixels within a range instead using:
class1 = np.where((data>0) & (data< 1), 1, 0)
print(np.sum(class1))
edited yesterday
answered yesterday
Nathan ThomasNathan Thomas
421212
421212
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
add a comment |
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
This answer provides only the number of cells in one class. I need the number of cells in an instance of those classes. That is what i meant by "patch".
– benschbob91
21 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
@benschbob91 I see. I do have a solution for this but it requires rather specific software (RSGISLib). I think the easiest thing would be to represent connected pixels as objects and then count the pixels in each. A long way round would be to vectorize the dataset and then use zonal stats (count)
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
Or try: stackoverflow.com/questions/49771746/…
– Nathan Thomas
4 hours ago
add a comment |
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2 things: [1] Image looks python - can you provide the associated array of the image that you've plotted - that'll help with finding a solution [2] Do you need a unique number for each isolated patch (i.e. so that a given patch count relates to the contiguous cells of a given classification) or a count of the number of pixels per classification group for the image generally?
– ChrisWills
yesterday
[1] did so see edit. [2] the first one: I need the count of each isolated patch doesn't matter which class it belongs to.
– benschbob91
21 hours ago
Does this help? stackoverflow.com/questions/39346545/…
– ChrisWills
8 hours ago